PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J01440.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 145aa    MW: 17214.6 Da    PI: 9.1216
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J01440.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.21.3e-2331120188
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                     kfY++YA + GFsvrk+k +++  ++e+++r+fvCs+eg+r e++ + t+++r++ra tr++C+a+l v+++  +g w+v++++  H+  
  Pahal.J01440.1  31 KFYDAYALHKGFSVRKDKVSYKPSTKEVIWRRFVCSCEGYRMEKHFEtTDQKRQPRALTRCECNARLDVQRSAsNGIWYVIDFVDVHTEG 120
                     6****************************************9998776899999*****************999*************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.6E-2231121IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MEANGYVSLE EIEEYNYVAN QTFNTKEDFF KFYDAYALHK GFSVRKDKVS YKPSTKEVIW  60
RRFVCSCEGY RMEKHFETTD QKRQPRALTR CECNARLDVQ RSASNGIWYV IDFVDVHTEG  120
LMILKKRRQW SFGLVGFVHA RLWK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700767.19e-54PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLK3YLN56e-51K3YLN5_SETIT; Uncharacterized protein
STRINGSi015159m2e-50(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.17e-13FAR1 family protein